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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_46015336_46015422_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
46015336 - 46015422
Intron Length:
87

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGATCG
5'SS Class:
strong_major
3'SS Sequence:
ACTTCATTTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTCAT
U12 Branch Point Sequence:
TATTTTTCCACT
Flanking Amino Acid:
VKDATNTGIKCAGIDVRLCD
Intron Amino Acid Position:
294

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
0.9
67.8
38.2
Major BPS
78.6
0.71
1
79.6
32.9
Major PPT
77.1
0.61
0.8
74.4
34.7
Minor 5ss
44.3
-0.6
2.8
56.9
47.4
Minor BPS
52.8
0.17
2
76.67
40.2

Associated Gene:

Gene:
METAP2
Ensembl Gene ID:
ENSAPLG00000004742
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004925
46010826 - 46028289
17464