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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_46015781_46017486_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
46015781 - 46017486
Intron Length:
1706

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGGACA
5'SS Class:
major
3'SS Sequence:
CCTCTGCTCTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTTAT
U12 Branch Point Sequence:
TTTTTTTTTTCT
Flanking Amino Acid:
IKPGMTMIEICEKLEDCSRK
Intron Amino Acid Position:
201

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
0.9
70.1
35.3
Major BPS
71.3
0.53
1
61.3
37
Major PPT
71.2
0.48
0.8
68.8
31.7
Minor 5ss
27.2
-2.6
2.9
28.8
37
Minor BPS
45.5
-0.2
3.6
82.93
38.6

Associated Gene:

Gene:
METAP2
Ensembl Gene ID:
ENSAPLG00000004742
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004925
46010826 - 46028289
17464