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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_46023964_46024295_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
46023964 - 46024295
Intron Length:
332

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAC|GTAGGTATC
5'SS Class:
major
3'SS Sequence:
TTGTACTCAACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TTGTACTCAACA
Flanking Amino Acid:
KKKKKKKKKGPKVQTDPPSI
Intron Amino Acid Position:
113

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.8
0.51
1.3
76.2
39.9
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
71.8
0.49
1
66.8
39.1
Minor 5ss
40.3
-1.1
3.1
53
37.5
Minor BPS
65.2
0.47
1.8
76.99
39.7

Associated Gene:

Gene:
METAP2
Ensembl Gene ID:
ENSAPLG00000004742
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004925
46010826 - 46028289
17464