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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_46024362_46027557_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
46024362 - 46027557
Intron Length:
3196

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAG|GCAAGTGTA
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTTCTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
ATGTTCATAATG
Flanking Amino Acid:
EDKDKDDDDEDGEGEGDGAT
Intron Amino Acid Position:
91

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
99.1
1.16
0.7
91.7
21.4
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
84.8
0.78
0.7
81.6
30.4
Minor 5ss
25.9
-2.8
4.1
39.9
46.1
Minor BPS
57.2
0.09
1.7
62.12
40.2

Associated Gene:

Gene:
METAP2
Ensembl Gene ID:
ENSAPLG00000004742
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004925
46010826 - 46028289
17464