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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_4602988_4633148_F

Intron Information:

Intron Rank:
141207
Intron Class:
major
Intron Phase:
Intron Coordinates:
4602988 - 4633148
Intron Length:
30161

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAGGTGGT
5'SS Class:
major
3'SS Sequence:
GTTCCATTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTATACTTACAG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
68.8
42.2
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
80.2
0.68
0.9
73.5
35.9
Minor 5ss
33.2
-1.9
3.5
45.9
44.6
Minor BPS
51.2
-0.1
2
62.83
44.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026047
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021914
4602559 - 4633330
30772