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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_46079322_46083154_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
46079322 - 46083154
Intron Length:
3833

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGCATT
5'SS Class:
strong_major
3'SS Sequence:
TCCCCTTTTTAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
TAGTTATCAATT
Flanking Amino Acid:
KWKQLLFSDHAAVKPLSPVE
Intron Amino Acid Position:
616

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
83.5
35
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
73.8
0.54
1
78
28
Minor 5ss
45.5
-0.5
2.9
63.6
42
Minor BPS
51.6
0.13
1.8
70.29
40.8

Associated Gene:

Gene:
VEZT
Ensembl Gene ID:
ENSAPLG00000005408
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038245
46078040 - 46136101
58062
ENSAPLT00000023238
46078720 - 46136101
57382
ENSAPLT00000005620
46061332 - 46136101
74770
ENSAPLT00000046302
46077671 - 46136101
58431
ENSAPLT00000043696
46051264 - 46136101
84838