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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_46084629_46089962_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
46084629 - 46089962
Intron Length:
5334

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATATG
5'SS Class:
strong_major
3'SS Sequence:
CTTTCCCCTAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TTTTTCTTCATT
Flanking Amino Acid:
KMSGKNPNKKGKLEAFCDNL
Intron Amino Acid Position:
513

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.1
0.9
0.9
84.2
33.9
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
72
0.5
1
71.6
27.1
Minor 5ss
38.7
-1.3
2.9
50.6
45.9
Minor BPS
73.4
0.82
1.7
91.07
32.9

Associated Gene:

Gene:
VEZT
Ensembl Gene ID:
ENSAPLG00000005408
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023238
46078720 - 46136101
57382
ENSAPLT00000005620
46061332 - 46136101
74770
ENSAPLT00000046302
46077671 - 46136101
58431
ENSAPLT00000043696
46051264 - 46136101
84838
ENSAPLT00000038245
46078040 - 46136101
58062