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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_46090157_46090978_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
46090157 - 46090978
Intron Length:
822

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTAAGTTTA
5'SS Class:
major
3'SS Sequence:
TTTTATTACTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTTATTACTT
Flanking Amino Acid:
LQLHLKALLNEVIILEDELE
Intron Amino Acid Position:
448

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1
77.8
33.2
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
78
0.63
0.9
78.2
35
Minor 5ss
45
-0.5
2.8
54.7
43.6
Minor BPS
57.7
0.32
1.8
78.9
37.5

Associated Gene:

Gene:
VEZT
Ensembl Gene ID:
ENSAPLG00000005408
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023238
46078720 - 46136101
57382
ENSAPLT00000005620
46061332 - 46136101
74770
ENSAPLT00000046302
46077671 - 46136101
58431
ENSAPLT00000043696
46051264 - 46136101
84838
ENSAPLT00000038245
46078040 - 46136101
58062