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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_46091311_46094456_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
46091311 - 46094456
Intron Length:
3146

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATCTCT
5'SS Class:
strong_major
3'SS Sequence:
CCTTGTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTTAT
U12 Branch Point Sequence:
CTAACTTCACCT
Flanking Amino Acid:
TDGFSLPALKVLFQLWVGQS
Intron Amino Acid Position:
338

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
74.3
37
Major BPS
76.3
0.65
1
67.3
39.3
Major PPT
85
0.79
0.8
78.9
33.1
Minor 5ss
46.6
-0.4
2.8
66.3
44.7
Minor BPS
47.9
-0
1.9
65.55
45

Associated Gene:

Gene:
VEZT
Ensembl Gene ID:
ENSAPLG00000005408
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038245
46078040 - 46136101
58062
ENSAPLT00000023238
46078720 - 46136101
57382
ENSAPLT00000005620
46061332 - 46136101
74770
ENSAPLT00000046302
46077671 - 46136101
58431
ENSAPLT00000043696
46051264 - 46136101
84838