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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_46102621_46105820_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
46102621 - 46105820
Intron Length:
3200

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTGAGTCCA
5'SS Class:
major
3'SS Sequence:
TTTACTTTTCAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAC
U12 Branch Point Sequence:
TCACATTTTACT
Flanking Amino Acid:
ETEVISRGFTLLLDRVSAAC
Intron Amino Acid Position:
238

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.8
0.44
1.1
61
39.3
Major BPS
77.8
0.69
0.9
69.4
37.3
Major PPT
77
0.61
1
75.5
38.4
Minor 5ss
32
-2.1
2.9
43.6
43.3
Minor BPS
49.1
0.01
1.8
67.21
43.1

Associated Gene:

Gene:
VEZT
Ensembl Gene ID:
ENSAPLG00000005408
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038245
46078040 - 46136101
58062
ENSAPLT00000005620
46061332 - 46136101
74770
ENSAPLT00000046302
46077671 - 46136101
58431
ENSAPLT00000043696
46051264 - 46136101
84838