Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_46106097_46107450_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

46106097 - 46107450

Intron Length:

1354

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGA|GTGAGTTTT

5'SS Class:

major

3'SS Sequence:

TCTCTGTTTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATATTAC

U12 Branch Point Sequence:

CTGATATTACTT

Flanking Amino Acid:

HIFASGILLKEDVSLLLAFV

Intron Amino Acid Position:

169

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.59

77.7

33.3

Major BPS

0.4

1.1

57.8

38.6

Major PPT

85.2

0.79

0.8

79.9

32.1

Minor 5ss

-0.9

54.7

43.6

Minor BPS

45.7

-0.2

1.9

60.74

43.6

Associated Gene:

Gene:

VEZT

Ensembl Gene ID:

ENSAPLG00000005408

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000046302

46077671 - 46136101

58431

ENSAPLT00000043696

46051264 - 46136101

84838