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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_46107817_46110215_R

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
46107817 - 46110215
Intron Length:
2399

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
CGTTTGTGGTAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
TTTTTTTCTCCT
Flanking Amino Acid:
KKDDDILHRLDVGFRFDTLR
Intron Amino Acid Position:
88

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.4
0.93
0.8
83.2
28.5
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
53.8
0.09
1.3
59.5
45.3
Minor 5ss
34.5
-1.8
3.3
45.9
43.7
Minor BPS
39.9
-0.7
3.6
75.28
41.8

Associated Gene:

Gene:
VEZT
Ensembl Gene ID:
ENSAPLG00000005408
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043696
46051264 - 46136101
84838
ENSAPLT00000038245
46078040 - 46136101
58062
ENSAPLT00000023238
46078720 - 46136101
57382
ENSAPLT00000005620
46061332 - 46136101
74770
ENSAPLT00000046302
46077671 - 46136101
58431