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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_46182102_46185155_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
46182102 - 46185155
Intron Length:
3054

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATGTC
5'SS Class:
strong_major
3'SS Sequence:
CTTCATCCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TATTTCTTCATC
Flanking Amino Acid:
EESADYRDTQDALAVVIEVA
Intron Amino Acid Position:
1066

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.5
0.88
0.9
82
29.3
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
80.9
0.7
0.8
77.5
30.9
Minor 5ss
36.6
-1.5
3.4
52
45.2
Minor BPS
64.9
0.45
1.7
74.79
36.1

Associated Gene:

Gene:
FGD6
Ensembl Gene ID:
ENSAPLG00000005867
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044085
46136529 - 46200580
64052
ENSAPLT00000006108
46143458 - 46202820
59363