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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_46185975_46187377_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
46185975 - 46187377
Intron Length:
1403

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGAAGG
5'SS Class:
strong_major
3'SS Sequence:
TTCTGCATTACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTAAA
U12 Branch Point Sequence:
TAGTCACTAAAA
Flanking Amino Acid:
KVMQPRMFFLFNDALLYTTP
Intron Amino Acid Position:
1133

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.76
0.9
68.2
42.8
Major BPS
65.2
0.38
0.9
65.5
27.9
Major PPT
79.9
0.67
0.9
73.1
36
Minor 5ss
33
-1.9
2.9
37.5
41.1
Minor BPS
48.8
-0
2
64.42
41

Associated Gene:

Gene:
FGD6
Ensembl Gene ID:
ENSAPLG00000005867
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006108
46143458 - 46202820
59363
ENSAPLT00000044085
46136529 - 46200580
64052