Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_46196709_46197405_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

46196709 - 46197405

Intron Length:

697

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAA|GTAAGTGCT

5'SS Class:

strong_major

3'SS Sequence:

CTTTTCATTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTCAT

U12 Branch Point Sequence:

TTTCTTTTCATT

Flanking Amino Acid:

QKKIPAALKEVSANTEDSTM

Intron Amino Acid Position:

1348

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.3

0.86

0.9

81.6

29.9

Major BPS

100

1.24

0.5

100

Major PPT

87.8

0.85

0.7

85.6

27.3

Minor 5ss

-1.5

3.3

50.9

39.6

Minor BPS

59.7

0.39

1.7

80.3

36.2

Associated Gene:

Gene:

FGD6

Ensembl Gene ID:

ENSAPLG00000005867

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000006108

46143458 - 46202820

59363

ENSAPLT00000044085

46136529 - 46200580

64052