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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_46200084_46200516_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
46200084 - 46200516
Intron Length:
433

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
ATTTTATTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTATTTTATTT
Flanking Amino Acid:
FKADDPHSAQNSKF*
Intron Amino Acid Position:
1423

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
83.5
27.6
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
86.5
0.82
0.8
78.3
39.6
Minor 5ss
36.9
-1.5
3.1
49.9
40.5
Minor BPS
61.8
0.45
1.6
79.69
37

Associated Gene:

Gene:
FGD6
Ensembl Gene ID:
ENSAPLG00000005867
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044085
46136529 - 46200580
64052