Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_46200084_46202783_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

46200084 - 46202783

Intron Length:

2700

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAA|GTAAGAAAT

5'SS Class:

strong_major

3'SS Sequence:

AATTTTCCAATAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCTTCAT

U12 Branch Point Sequence:

ATCTTCATAACA

Flanking Amino Acid:

FKADDPHSAQKWIEAFQEGT

Intron Amino Acid Position:

1440

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.7

0.79

0.9

83.5

27.6

Major BPS

87.4

0.93

0.9

87.9

29.5

Major PPT

68.5

0.42

0.9

64.1

37.1

Minor 5ss

36.9

-1.5

3.1

49.9

40.5

Minor BPS

65.5

0.48

1.6

74.29

37.2

Associated Gene:

Gene:

FGD6

Ensembl Gene ID:

ENSAPLG00000005867

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000006108

46143458 - 46202820

59363