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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_46222704_46225862_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
46222704 - 46225862
Intron Length:
3159

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAATGTAA
5'SS Class:
major
3'SS Sequence:
TTTTTTTTGACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTTAA
U12 Branch Point Sequence:
TTTTTTTTGACA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.7
0.53
1.1
66.5
34.9
Major BPS
63.3
0.33
1.2
55.4
41.7
Major PPT
89
0.88
0.8
87.5
30
Minor 5ss
36.3
-1.6
3.3
43.5
46
Minor BPS
79.3
0.92
1
85.48
26.3

Associated Gene:

Gene:
NR2C1
Ensembl Gene ID:
ENSAPLG00000006253
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046922
46222532 - 46255381
32850
ENSAPLT00000029426
46222532 - 46255381
32850
ENSAPLT00000006547
46222532 - 46255381
32850