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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_46230624_46239464_F

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
46230624 - 46239464
Intron Length:
8841

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGCTTC
5'SS Class:
weak_major
3'SS Sequence:
TATTTTCTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATGAA
U12 Branch Point Sequence:
TCTTTCCTATTT
Flanking Amino Acid:
SGLSLPQRIQILTDNSPNEQ
Intron Amino Acid Position:
55

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.77
0.9
74.9
36.3
Major BPS
58.9
0.22
1
49.8
35.1
Major PPT
89.2
0.88
0.7
81.5
35.8
Minor 5ss
65.8
0.53
2.2
76
40.1
Minor BPS
53.9
0.2
1.9
75.75
41.6

Associated Gene:

Gene:
NR2C1
Ensembl Gene ID:
ENSAPLG00000006253
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029426
46222532 - 46255381
32850