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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_46239547_46240930_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
46239547 - 46240930
Intron Length:
1384

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTAAC
5'SS Class:
major
3'SS Sequence:
GTTTTGTAAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTAAT
U12 Branch Point Sequence:
TGTTTTGTAAAT
Flanking Amino Acid:
LCVVCGDKASGRHYGAVTCE
Intron Amino Acid Position:
159

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
76
33.1
Major BPS
77.9
0.69
0.8
75.9
25
Major PPT
66.6
0.37
1
63
42.3
Minor 5ss
42.2
-0.9
2.5
54
43.3
Minor BPS
53.8
0.2
2.1
77.19
39.4

Associated Gene:

Gene:
NR2C1
Ensembl Gene ID:
ENSAPLG00000006253
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029426
46222532 - 46255381
32850
ENSAPLT00000006547
46222532 - 46255381
32850
ENSAPLT00000046922
46222532 - 46255381
32850
ENSAPLT00000044701
46222532 - 46255381
32850