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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_46243824_46245171_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
46243824 - 46245171
Intron Length:
1348

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATATGAT
5'SS Class:
major
3'SS Sequence:
AATTTTCCCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
AAAGCTATAATT
Flanking Amino Acid:
EPTVLMTPDKVEACQGDLST
Intron Amino Acid Position:
299

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
76.4
32.3
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
73.3
0.52
0.8
71.3
34.8
Minor 5ss
39.8
-1.1
3.3
57.3
47.4
Minor BPS
49.9
0.08
1.7
65.29
39.3

Associated Gene:

Gene:
NR2C1
Ensembl Gene ID:
ENSAPLG00000006253
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046922
46222532 - 46255381
32850
ENSAPLT00000044701
46222532 - 46255381
32850
ENSAPLT00000029426
46222532 - 46255381
32850
ENSAPLT00000006547
46222532 - 46255381
32850