Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_46245357_46248229_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

46245357 - 46248229

Intron Length:

2873

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGGCAC

5'SS Class:

strong_major

3'SS Sequence:

TTGGTCTTCACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CAGTAAT

U12 Branch Point Sequence:

TTGGTCTTCACA

Flanking Amino Acid:

QEEQASSDVTRSRCPTSRDS

Intron Amino Acid Position:

283

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.3

0.9

38.2

Major BPS

64.3

0.36

1.2

65.3

38.6

Major PPT

0.63

0.9

72.3

37.9

Minor 5ss

-2.2

3.3

45.6

Minor BPS

57.5

0.23

1.9

70.13

42.8

Associated Gene:

Gene:

NR2C1

Ensembl Gene ID:

ENSAPLG00000006253

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000046922

46222532 - 46255381

32850

ENSAPLT00000044701

46222532 - 46255381

32850

ENSAPLT00000029426

46222532 - 46255381

32850