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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_46248994_46250046_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
46248994 - 46250046
Intron Length:
1053

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTACTTAAT
5'SS Class:
major
3'SS Sequence:
TATTTTCTGGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTATTTTATTT
Flanking Amino Acid:
LLSDAHVAFRLTMPSPMPEY
Intron Amino Acid Position:
415

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.2
0.45
1.1
70.9
40.8
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
76
0.59
0.9
74.1
36.3
Minor 5ss
36
-1.6
3
42.4
44.5
Minor BPS
61.8
0.45
1.6
79.69
37

Associated Gene:

Gene:
NR2C1
Ensembl Gene ID:
ENSAPLG00000006253
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044701
46222532 - 46255381
32850
ENSAPLT00000029426
46222532 - 46255381
32850
ENSAPLT00000006547
46222532 - 46255381
32850
ENSAPLT00000046922
46222532 - 46255381
32850