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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_46250169_46251960_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
46250169 - 46251960
Intron Length:
1792

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTAATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTTT
U12 Branch Point Sequence:
TTTTTTTTAATA
Flanking Amino Acid:
ARSIPCFQALGQDNSILLVK
Intron Amino Acid Position:
455

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.91
0.9
85.2
32.2
Major BPS
38.1
-0.7
4.3
71.7
44.6
Major PPT
86.6
0.82
0.7
85.3
27.9
Minor 5ss
38.2
-1.3
3.4
49.9
46.4
Minor BPS
82.2
1.01
0.9
86.33
25.3

Associated Gene:

Gene:
NR2C1
Ensembl Gene ID:
ENSAPLG00000006253
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006547
46222532 - 46255381
32850
ENSAPLT00000046922
46222532 - 46255381
32850
ENSAPLT00000044701
46222532 - 46255381
32850
ENSAPLT00000029426
46222532 - 46255381
32850