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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_46252101_46253770_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
46252101 - 46253770
Intron Length:
1670

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGTGA
5'SS Class:
strong_major
3'SS Sequence:
TGTGTCAACTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
GTTTTTATATTT
Flanking Amino Acid:
VNHLHSSLQQDKLPTDRGKL
Intron Amino Acid Position:
502

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.2
0.93
0.9
75.7
36.7
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
66.7
0.38
1
63.5
41.9
Minor 5ss
36.1
-1.6
3.3
47.1
48.3
Minor BPS
49.9
0.07
1.8
72.8
38.7

Associated Gene:

Gene:
NR2C1
Ensembl Gene ID:
ENSAPLG00000006253
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044701
46222532 - 46255381
32850
ENSAPLT00000029426
46222532 - 46255381
32850
ENSAPLT00000006547
46222532 - 46255381
32850
ENSAPLT00000046922
46222532 - 46255381
32850