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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_46254683_46255206_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
46254683 - 46255206
Intron Length:
524

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGTGTAAA
5'SS Class:
strong_major
3'SS Sequence:
ACTTACTTTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTTTACTAAACT
Flanking Amino Acid:
VTKAYPDDTYRLSRLLLRLP
Intron Amino Acid Position:
583

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.8
81
26.9
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
79.4
0.66
0.9
69.8
40.6
Minor 5ss
35.7
-1.6
2.6
41.3
45.3
Minor BPS
72.8
0.79
1.8
93.1
35.2

Associated Gene:

Gene:
NR2C1
Ensembl Gene ID:
ENSAPLG00000006253
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044701
46222532 - 46255381
32850
ENSAPLT00000029426
46222532 - 46255381
32850
ENSAPLT00000006547
46222532 - 46255381
32850
ENSAPLT00000046922
46222532 - 46255381
32850