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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_46265943_46266945_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
46265943 - 46266945
Intron Length:
1003

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTATGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTAATTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
ATTTTCTTAAGC
Flanking Amino Acid:
KYYEDKRNFFGRHRWVIYTT
Intron Amino Acid Position:
54

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
70.6
39.7
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
68.5
0.42
1.1
73.5
40.1
Minor 5ss
42.5
-0.8
3.1
54.1
44.6
Minor BPS
73.3
0.71
1.5
80.19
34.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015463
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016113
46264149 - 46267489
3341