Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_46267034_46267443_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

46267034 - 46267443

Intron Length:

410

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GTG|GTAAGCCTT

5'SS Class:

strong_major

3'SS Sequence:

CCTGTTCTTGCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGTGCAG

U12 Branch Point Sequence:

CTCTGTGCAGGT

Flanking Amino Acid:

EVDGSMVPPECLMQLTLPLS

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.6

0.77

74.5

41.9

Major BPS

44.4

-0.3

1.8

57.1

49.4

Major PPT

82.3

0.73

0.8

76.3

32.3

Minor 5ss

43.9

-0.7

3.2

62.5

43.1

Minor BPS

31.2

-1.3

2.4

46.65

46.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000015463

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000016113

46264149 - 46267489

3341