About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_46274328_46404725_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
46274328 - 46404725
Intron Length:
130398

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCGCC
5'SS Class:
strong_major
3'SS Sequence:
TTTGTCTCCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TAAAACTCAATT
Flanking Amino Acid:
MQRKVERHDMNTLS
Intron Amino Acid Position:
5

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.3
0.9
0.9
74.6
37.4
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
83.2
0.75
0.8
81.4
30.6
Minor 5ss
37.6
-1.4
3.3
50.9
45.8
Minor BPS
51
0.11
1.7
68.85
41.3

Associated Gene:

Gene:
TMCC3
Ensembl Gene ID:
ENSAPLG00000015453
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016096
46274316 - 46409801
135486