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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_46309169_46404725_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
46309169 - 46404725
Intron Length:
95557

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGTCTC
5'SS Class:
strong_major
3'SS Sequence:
TTTGTCTCCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TAAAACTCAATT
Flanking Amino Acid:
WQWWLACDQEVERHDMNTLS
Intron Amino Acid Position:
17

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
1
76.2
39.9
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
83.2
0.75
0.8
81.4
30.6
Minor 5ss
37.4
-1.4
3.3
52.4
44.8
Minor BPS
51
0.11
1.7
68.85
41.3

Associated Gene:

Gene:
TMCC3
Ensembl Gene ID:
ENSAPLG00000015453
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031019
46308867 - 46409801
100935