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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_4633290_4634281_F

Intron Information:

Intron Rank:
141208
Intron Class:
major
Intron Phase:
Intron Coordinates:
4633290 - 4634281
Intron Length:
992

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTCACTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
CTTTTCTTCACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.8
83.1
30.9
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
79.7
0.67
0.8
75.2
34.5
Minor 5ss
35.6
-1.6
3
47.8
47.9
Minor BPS
71.3
0.75
1.7
86.99
39.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026047
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022237
4633217 - 4638013
4797