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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_4633290_4637902_F

Intron Information:

Intron Rank:
141212
Intron Class:
major
Intron Phase:
Intron Coordinates:
4633290 - 4637902
Intron Length:
4613

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCACTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTAAT
U12 Branch Point Sequence:
TCATCACTAATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.8
83.1
30.9
Major BPS
74.4
0.61
0.9
73.6
28.6
Major PPT
85.3
0.79
0.7
82.8
27.3
Minor 5ss
35.6
-1.6
3
47.8
47.9
Minor BPS
49.2
-0.2
2
58.27
43.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026047
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036808
4633217 - 4638013
4797