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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_46405625_46407091_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
46405625 - 46407091
Intron Length:
1467

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATATTCT
5'SS Class:
major
3'SS Sequence:
TTTTCCTGAAAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAGAC
U12 Branch Point Sequence:
TTTTCCTGAAAA
Flanking Amino Acid:
ISQMLQEERYRYERLEDQLN
Intron Amino Acid Position:
304

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
76.5
33
Major BPS
69.3
0.48
1.1
66.7
40
Major PPT
65.1
0.34
1.1
68.3
36.5
Minor 5ss
48.3
-0.2
2.6
68.1
42.9
Minor BPS
76.2
0.82
1.5
86.18
31.9

Associated Gene:

Gene:
TMCC3
Ensembl Gene ID:
ENSAPLG00000015453
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040990
46347355 - 46409801
62447
ENSAPLT00000039012
46367166 - 46409801
42636
ENSAPLT00000031019
46308867 - 46409801
100935
ENSAPLT00000016096
46274316 - 46409801
135486