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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_46407228_46409498_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
46407228 - 46409498
Intron Length:
2271

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTTTCT
5'SS Class:
major
3'SS Sequence:
TTTCTATCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
TGTTTTCTATCT
Flanking Amino Acid:
QAYERSRDVQEALESCQTRV
Intron Amino Acid Position:
350

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1.1
74.5
36.6
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
86
0.81
0.8
78.1
35.4
Minor 5ss
41.8
-0.9
3
60.1
44.2
Minor BPS
53
0.17
1.9
76.81
39.9

Associated Gene:

Gene:
TMCC3
Ensembl Gene ID:
ENSAPLG00000015453
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039012
46367166 - 46409801
42636
ENSAPLT00000031019
46308867 - 46409801
100935
ENSAPLT00000016096
46274316 - 46409801
135486
ENSAPLT00000040990
46347355 - 46409801
62447