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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_46424696_46425039_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
46424696 - 46425039
Intron Length:
344

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACAGTAT
5'SS Class:
major
3'SS Sequence:
TTTTAACTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
GATATTTTAACT
Flanking Amino Acid:
NYQTLKAEHIRLQEEYTKLQ
Intron Amino Acid Position:
50

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.6
0.53
1.1
69.1
38
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
84.4
0.77
0.8
77.7
35.4
Minor 5ss
36.7
-1.5
3.6
55.1
49.1
Minor BPS
69.2
0.68
1.2
78.38
37.5

Associated Gene:

Gene:
CEP83
Ensembl Gene ID:
ENSAPLG00000015313
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015963
46420542 - 46445047
24506