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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_46425191_46425955_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
46425191 - 46425955
Intron Length:
765

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGCAA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTGTCTCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTATTTATGATA
Flanking Amino Acid:
TQELERLKTQVLTPQKLELL
Intron Amino Acid Position:
101

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
0.9
70.9
36.4
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
73.7
0.53
1
71.8
38.4
Minor 5ss
24.6
-2.9
3
28.8
43.6
Minor BPS
53.3
0.1
1.5
66.87
33.2

Associated Gene:

Gene:
CEP83
Ensembl Gene ID:
ENSAPLG00000015313
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015963
46420542 - 46445047
24506