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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_46430684_46431837_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
46430684 - 46431837
Intron Length:
1154

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGATTA
5'SS Class:
strong_major
3'SS Sequence:
TCCTTTATTCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCTTTAT
U12 Branch Point Sequence:
ACCTCCTTTATT
Flanking Amino Acid:
EMQSLTRSLEAEKKSAEQQI
Intron Amino Acid Position:
260

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.3
1.02
0.7
86.9
22.8
Major BPS
71.5
0.54
1.1
63.3
42.8
Major PPT
73.1
0.52
1
71.7
37.2
Minor 5ss
41.5
-0.9
3.1
56
48.2
Minor BPS
63.8
0.52
1.6
73.81
43.3

Associated Gene:

Gene:
CEP83
Ensembl Gene ID:
ENSAPLG00000015313
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015963
46420542 - 46445047
24506