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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_46437066_46440282_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
46437066 - 46440282
Intron Length:
3217

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTAGTGGTT
5'SS Class:
major
3'SS Sequence:
ATACAATTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTTATACAATT
Flanking Amino Acid:
ESSKKELQRLRLKIQQQAMQ
Intron Amino Acid Position:
440

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
62.7
0.3
1.2
61
43.7
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
67.6
0.4
1
63.5
42
Minor 5ss
34.3
-1.8
4
55.2
49
Minor BPS
50.5
0.09
1.9
78.26
38.1

Associated Gene:

Gene:
CEP83
Ensembl Gene ID:
ENSAPLG00000015313
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015963
46420542 - 46445047
24506