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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_46440359_46441553_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
46440359 - 46441553
Intron Length:
1195

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGTT
5'SS Class:
strong_major
3'SS Sequence:
TTCATTTTTATAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
ATCTTCTCAAAT
Flanking Amino Acid:
KKRESGDLKQQIQDMQLQVA
Intron Amino Acid Position:
466

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.5
1.02
0.7
88
25.3
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
84.1
0.77
0.7
79.9
32.1
Minor 5ss
36.4
-1.5
3.6
55.7
48.5
Minor BPS
60
0.39
1.6
75.64
40.8

Associated Gene:

Gene:
CEP83
Ensembl Gene ID:
ENSAPLG00000015313
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015963
46420542 - 46445047
24506