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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_46454887_46454976_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
46454887 - 46454976
Intron Length:
90

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGTGGTCG
5'SS Class:
major
3'SS Sequence:
TTTTCTGTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTAAAAA
U12 Branch Point Sequence:
ACCGTCTGACCA
Flanking Amino Acid:
VDEFLTQESKKHENEFNEEV
Intron Amino Acid Position:
511

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.1
0.62
1
61.8
39.2
Major BPS
61.4
0.28
1.1
67.9
34.4
Major PPT
85.8
0.8
0.7
85.1
29.7
Minor 5ss
37.7
-1.4
3.1
47.1
48.5
Minor BPS
44.6
-0.4
1.8
49.27
42.1

Associated Gene:

Gene:
PLXNC1
Ensembl Gene ID:
ENSAPLG00000015114
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015790
46452478 - 46479815
27338