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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_46457113_46457548_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
46457113 - 46457548
Intron Length:
436

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACATCCG
5'SS Class:
major
3'SS Sequence:
TTTCCCTGTCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTAATTTTAAAG
Flanking Amino Acid:
PDVVHIWKTNSLPLRFWVNI
Intron Amino Acid Position:
414

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.7
0.56
1.1
59.8
44.9
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
76.4
0.59
0.9
69.8
36.6
Minor 5ss
32.8
-2
3.1
42.2
44.5
Minor BPS
58.1
0.12
1.5
61.85
39.9

Associated Gene:

Gene:
PLXNC1
Ensembl Gene ID:
ENSAPLG00000015114
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015790
46452478 - 46479815
27338