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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_46457713_46459218_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
46457713 - 46459218
Intron Length:
1506

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCTGT
5'SS Class:
strong_major
3'SS Sequence:
CTTTACTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTCAT
U12 Branch Point Sequence:
TTTTCTTTACTT
Flanking Amino Acid:
MYLTKLLSTKVAIHSVVENL
Intron Amino Acid Position:
360

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.84
0.9
74.8
38.1
Major BPS
79.7
0.74
1
79.6
35.6
Major PPT
87.3
0.84
0.7
84.7
29.7
Minor 5ss
40.1
-1.1
3.1
55.9
48.3
Minor BPS
75.9
0.89
1.5
91.31
32.6

Associated Gene:

Gene:
PLXNC1
Ensembl Gene ID:
ENSAPLG00000015114
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015790
46452478 - 46479815
27338