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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_46459327_46459413_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
46459327 - 46459413
Intron Length:
87

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
TCTTCGCTGACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTAAC
U12 Branch Point Sequence:
TCACCTCTAACC
Flanking Amino Acid:
VDYSDEHCHLILPDSEANKD
Intron Amino Acid Position:
324

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
75.5
29.5
Major BPS
72.3
0.55
1
73.3
28.9
Major PPT
73
0.52
1
68.4
37.5
Minor 5ss
35.2
-1.7
2.8
38.4
40.8
Minor BPS
56.2
0.18
1.7
65.45
39.9

Associated Gene:

Gene:
PLXNC1
Ensembl Gene ID:
ENSAPLG00000015114
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015790
46452478 - 46479815
27338