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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_46460344_46463469_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
46460344 - 46463469
Intron Length:
3126

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCATG
5'SS Class:
strong_major
3'SS Sequence:
GTTTTACTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAG
U12 Branch Point Sequence:
TCGGTTTTACTT
Flanking Amino Acid:
RKLNTIGHYEISNGATIKVF
Intron Amino Acid Position:
295

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.8
81.8
38.5
Major BPS
67.2
0.43
1.5
77.4
37.3
Major PPT
85.2
0.79
0.8
82.1
34.6
Minor 5ss
43
-0.8
2.9
56.9
47.4
Minor BPS
48.5
-0
1.7
61.75
43.8

Associated Gene:

Gene:
PLXNC1
Ensembl Gene ID:
ENSAPLG00000015114
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015790
46452478 - 46479815
27338