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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_46463574_46464472_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
46463574 - 46464472
Intron Length:
899

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TGTTGTACTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTGTAAT
U12 Branch Point Sequence:
TGAGGTGTAATT
Flanking Amino Acid:
YGLQMDEIGLELVSEEQQRE
Intron Amino Acid Position:
260

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.1
0.9
0.9
77.9
36.8
Major BPS
66.7
0.41
1.4
69.7
44.2
Major PPT
77.4
0.62
0.9
70.8
39.8
Minor 5ss
36.4
-1.5
3.3
46.1
43.6
Minor BPS
42.8
-0.4
2.3
60.56
43.9

Associated Gene:

Gene:
PLXNC1
Ensembl Gene ID:
ENSAPLG00000015114
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015790
46452478 - 46479815
27338