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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_46464651_46472024_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
46464651 - 46472024
Intron Length:
7374

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTACGTTTG
5'SS Class:
major
3'SS Sequence:
GTTTCTACCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATAACAT
U12 Branch Point Sequence:
TTCCCTGTAAGT
Flanking Amino Acid:
LWQVSEFKTVTLNVIFEKIP
Intron Amino Acid Position:
201

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
71.6
40.8
Major BPS
62.2
0.3
1.1
69.4
35.8
Major PPT
75.4
0.57
0.9
66.9
39.2
Minor 5ss
42.9
-0.8
3
54.6
44.9
Minor BPS
48.8
-0
2.3
72.56
44.8

Associated Gene:

Gene:
PLXNC1
Ensembl Gene ID:
ENSAPLG00000015114
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015790
46452478 - 46479815
27338