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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_46472172_46473540_R

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
46472172 - 46473540
Intron Length:
1369

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTATCCGTA
5'SS Class:
weak_major
3'SS Sequence:
TTTCATATCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATAAA
U12 Branch Point Sequence:
TGTTTCATATCC
Flanking Amino Acid:
MSVCLSGFLRETIGEPFYLL
Intron Amino Acid Position:
152

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
59.4
0.22
1.3
55.9
43.4
Major BPS
69.8
0.49
1
70.3
31.8
Major PPT
74.2
0.54
0.9
66.8
38.9
Minor 5ss
54
0.13
2.9
63.9
47.7
Minor BPS
56
0.17
1.9
71.85
39

Associated Gene:

Gene:
PLXNC1
Ensembl Gene ID:
ENSAPLG00000015114
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015790
46452478 - 46479815
27338