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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_46473740_46474303_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
46473740 - 46474303
Intron Length:
564

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATAGTAT
5'SS Class:
major
3'SS Sequence:
CTTTTCTGAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATAATAC
U12 Branch Point Sequence:
CTTTTCTGAACA
Flanking Amino Acid:
EKQKNFSVTDRCLFASFLTI
Intron Amino Acid Position:
85

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.2
0.57
1
70.7
35.5
Major BPS
49.5
-0
1.1
47.1
35.7
Major PPT
76.1
0.59
1
73.2
36
Minor 5ss
43.8
-0.7
3.3
63.6
48.1
Minor BPS
72.8
0.71
1.4
79.77
36.3

Associated Gene:

Gene:
PLXNC1
Ensembl Gene ID:
ENSAPLG00000015114
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015790
46452478 - 46479815
27338