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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_46474939_46478009_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
46474939 - 46478009
Intron Length:
3071

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAATATT
5'SS Class:
strong_major
3'SS Sequence:
TCTTGTATTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATACAT
U12 Branch Point Sequence:
CTGTCTTGTATT
Flanking Amino Acid:
HFAIRTFFPESGGFASIFSE
Intron Amino Acid Position:
30

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.96
0.8
93.3
21.1
Major BPS
74.9
0.62
1
81.3
29.9
Major PPT
79.9
0.67
0.8
78
35.1
Minor 5ss
41
-1
3
59.7
44.8
Minor BPS
49.5
0.05
1.8
67.85
43.9

Associated Gene:

Gene:
PLXNC1
Ensembl Gene ID:
ENSAPLG00000015114
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015790
46452478 - 46479815
27338