About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_46478114_46478501_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
46478114 - 46478501
Intron Length:
388

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAGGTCTA
5'SS Class:
major
3'SS Sequence:
GGTGTTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTAAA
U12 Branch Point Sequence:
TGGGTGGGGAGG
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1.1
68.9
43.8
Major BPS
68.7
0.47
0.9
67.9
25
Major PPT
80.4
0.68
0.9
76.9
42.1
Minor 5ss
36
-1.6
3.2
40.9
45.4
Minor BPS
26
-2
2.3
26.17
36.4

Associated Gene:

Gene:
PLXNC1
Ensembl Gene ID:
ENSAPLG00000015114
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015790
46452478 - 46479815
27338